U-MIMIC Documentation

Unified Mechanistic Inference from Multimodal Imaging and Counts

U-MIMIC is a Python package for modeling and analyzing tumor population dynamics under drug treatment. It provides mechanistic simulation (ODE, Gillespie, tau-leaping), multimodal observation models (cell counts, BLI, tumor volume), and inference workflows (MLE, MCMC, SMC, hierarchical Bayesian).

Developed by the Data Analysis Team @KaziLab.se.

Getting Started

pip install umimic
umimic --help

User Guide

Reference

Infrastructure