# U-MIMIC Documentation

**Unified Mechanistic Inference from Multimodal Imaging and Counts**

U-MIMIC is a Python package for modeling and analyzing tumor population dynamics
under drug treatment. It provides mechanistic simulation (ODE, Gillespie,
tau-leaping), multimodal observation models (cell counts, BLI, tumor volume),
and inference workflows (MLE, MCMC, SMC, hierarchical Bayesian).

Developed by the Data Analysis Team @KaziLab.se.

## Getting Started

```bash
pip install umimic
umimic --help
```

```{toctree}
:maxdepth: 2
:caption: User Guide

quickstart
configuration
```

```{toctree}
:maxdepth: 2
:caption: Reference

api
```

```{toctree}
:maxdepth: 2
:caption: Infrastructure

readthedocs-github
pypi-trusted-publishing
```